Publications

← Research

Also on Google Scholar and ORCID. * denotes equal contribution.

Under review and in preparation

• Impact of wildfire-related fine particulate matter on tuberculosis notifications in Brazil: a nationwide panel study, 2003–2023Pham TM, Mendonça T, Zhang Y, Mallia D, Croda J, Cohen T, Andrews J, Réquia WJ, Walter KS
  medRxiv, under review · doi:10.64898/2026.07.01.26356762
• Trends in incidence and resistance for five major causes of bacteremia in a Canadian metropolitan area, 2006–22: a genomic and antibiotic use cohort studyPham TM et al.
  medRxiv, under review · doi:10.64898/2026.08.27.26361471
• Transmission or importation? Using SARS-CoV-2 genomics to guide infection control protocols in the NBAPham TM et al.
  In preparation

Published

2026

• Antimicrobial selection and multidrug resistance in four major pathogens in the US Veterans Affairs health-care system: a multicentre, retrospective, cohort studyPham TM, Zhang Y, Nevers M, Li H, Khader K, Grad YH, Samore M, Lipsitch M
  The Lancet Microbe, 7: 101445 · doi:10.1016/j.lanmic.2026.101445

2024

• Conference report of the 2024 Antimicrobial Resistance MeetingChong CE, Pham TM, Carey ME, et al.
  npj Antimicrobials and Resistance, 2: 43 · doi:10.1038/s44259-024-00058-z
• Trends in infection incidence and antimicrobial resistance in the US Veterans Affairs Healthcare System: a nationwide retrospective cohort study (2007–22)Pham TM, Zhang Y, Nevers M, Li H, Khader K, Grad YH, Lipsitch M, Samore M
  The Lancet Infectious Diseases, 24: 1333–1346 · doi:10.1016/s1473-3099(24)00416-x

2023

• The burden and dynamics of hospital-acquired SARS-CoV-2 in EnglandCooper BS, Evans S, Jafari Y, …, Pham TM, et al.
  Nature, 623: 132–138 · doi:10.1038/s41586-023-06634-z

2022

• Effectiveness of infection prevention and control interventions, excluding personal protective equipment, to prevent nosocomial transmission of SARS-CoV-2: a systematic review and call for actionJafari Y, Yin M, Lim C, …, Pham TM, et al.
  Infection Prevention in Practice, 4: 100192 · doi:10.1016/j.infpip.2021.100192
• Routes of transmission of VIM-positive Pseudomonas aeruginosa in the adult intensive care unit: analysis of 9 years of surveillance at a university hospital using a mathematical modelPham TM, Büchler AC, Voor in ‘t holt AF, Severin JA, Bootsma MCJ, Gommers D, Kretzschmar ME, Vos MC
  Antimicrobial Resistance & Infection Control, 11: 55 · doi:10.1186/s13756-022-01095-x
• The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020Knight GM, Pham TM, Stimson J, et al.
  BMC Infectious Diseases, 22: 556 · doi:10.1186/s12879-022-07490-4
• The effect of hand hygiene frequency on reducing acute respiratory infections in the community: a meta-analysisMo Y, Pham TM, Lim C, Horby P, Stewardson AJ, Harbarth S, Scott GM, Cooper BS
  Epidemiology and Infection, 150: e79 · doi:10.1017/s0950268822000516
• The importance of sustained compliance with physical distancing during COVID-19 vaccination rolloutTeslya A, Rozhnova G, Pham TM, van Wees DA, Nunner H, Godijk NG, Bootsma M, Kretzschmar ME
  Communications Medicine, 2: 146 · doi:10.1038/s43856-022-00207-3
• The potential impact of intensified community hand hygiene interventions on respiratory tract infections: a modelling studyPham TM, Yin M, Cooper BS
  Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 478: 20210746 · doi:10.1098/rspa.2021.0746

2021

• Interventions to control nosocomial transmission of SARS-CoV-2: a modelling studyPham TM, Tahir H, van de Wijgert JHHM, Van der Roest BR, Ellerbroek P, Bonten MJM, Bootsma MCJ, Kretzschmar ME
  BMC Medicine, 19: 211 · doi:10.1186/s12916-021-02060-y
• Tweede rapport modellering SARS-CoV-2 infecties in het voortgezet onderwijsPham TM, Westerhof I, Rozhnova G, Bootsma M, Kretzschmar M, Bruijning-Verhagen P
  Report to the Dutch Ministry of Education, UMC Utrecht · rijksoverheid.nl

2020

• Impact of self-imposed prevention measures and short-term government-imposed social distancing on mitigating and delaying a COVID-19 epidemic: A modelling studyTeslya A*, Pham TM*, Godijk NG*, Kretzschmar ME, Bootsma MCJ, Rozhnova G
  PLOS Medicine, 17: e1003166 · doi:10.1371/journal.pmed.1003166

2019

• Inference for Ordinal Log-Linear Models Based on Algebraic StatisticsPham TM, Kateri M
  Journal of Algebraic Statistics, 10: 30–50 · doi:10.18409/jas.v10i1.74
• Tracking Pseudomonas aeruginosa transmissions due to environmental contamination after discharge in ICUs using mathematical modelsPham TM, Kretzschmar M, Bertrand X, Bootsma M, Consortium CM
  PLOS Computational Biology, 15: e1006697 · doi:10.1371/journal.pcbi.1006697